Publications
2024
COA8 is a COX10-binding protein involved in the early biogenesis of cytochrome c oxidase
M Brischigliaro, K Čunátová, A Cabrera-Orefice, J Pei, C Franchin, M Roverso, S Povea-Cabello, S Bogialli, G Arrigoni, S Arnold, Q Cong, M Zeviani, C Viscomi, E Fernández-Vizarra
bioRxiv, 2024.04. 02.587738, 2024
Available at: https://www.biorxiv.org/content/10.1101/2024.04.02.587738.full.pdf
Genomics-based taxonomic rearrangement of Achlyodini and Carcharodini (Lepidoptera: Hesperiidae: Pyrginae)
J Zhang, Q Cong, J Shen, L Song, NV Grishin
Insecta Mundi, 2024
Available at: https://journals.flvc.org/mundi/article/download/135027/139251
Taxonomic advances driven by the genomic analysis of butterflies
J Zhang, Q Cong, J Shen, L Song, NV Grishin
DigitalCommons@University of Nebraska - Lincoln, Volume 11 Number 7, 2024
Available at: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1098&context=taxrpt
2023
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
Y Wang, LA Gallagher, PA Andrade, A Liu, IR Humphreys, S Turkarslan, KJ Cutler, ML Arrieta-Ortiz, Y Li, MC Radey, JS McLean, Q Cong, D Baker, NS Baliga SB Peterson and JD Mougous
Cell 186 (22), 4803-4817. e13, 2023
Available at: https://www.cell.com/cell/pdf/S0092-8674(23)00906-6.pdf
A tissue injury sensing and repair pathway distinct from host pathogen defense
S Liu, YH Hur, X Cai, Q Cong, Y Yang, C Xu, AM Bilate, KAU Gonzales, SM Parigi, CJ Cowley, B Hurwitz…
Cell 186 (10), 2127-2143. e22, 2023
Available at: https://www.cell.com/cell/pdf/S0092-8674%2823%2900328-8.pdf
Recent advances in predicting and modeling protein–protein interactions
J Durham, J Zhang, IR Humphreys, J Pei, Q Cong
Trends in biochemical sciences, 2023
Classification of domains in predicted structures of the human proteome
RD Schaeffer, J Zhang, LN Kinch, J Pei, Q Cong, NV Grishin
Proceedings of the National Academy of Sciences 120 (12), e2214069120, 2023
Available at: https://www.pnas.org/doi/full/10.1073/pnas.2214069120?doi=10.1073/pnas.2214069120
Resolving inconsistencies between Plötz’s descriptions and presumed type specimens of some Hesperiidae (Lepidoptera)
J Zhang, Q Cong, L Song, J Shen, T Léger, G Lamas, OHH Mielke, NV Grishin
Deutsche Entomologische Zeitschrift 70 (1), 159-174, 2023
Available at: https://dez.pensoft.net/article/98280/download/pdf/
DPAM: A domain parser for AlphaFold models
J Zhang, RD Schaeffer, J Durham, Q Cong, NV Grishin
Protein Science 32 (2), e4548, 2023
Available at: https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.4548
Genomic Analysis Reveals New Species and Subspecies of Butterflies
J Zhang, Q Cong, J Shen, L Song, NV Grishin
Available at: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1097&context=taxrpt
Butterfly classification and species discovery using genomics
J Zhang, Q Cong, J Shen, L Song, NV Grishin
Available at: https://digitalcommons.unl.edu/taxrpt/88/
A taxonomic list of the Old World genera in the subfamily Hesperiinae (Hesperiidae) arranged into tribes.
J Zhang, Q Cong, J Shen, L Song, NV Grishin
Available at: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1093&context=taxrpt
Additional taxonomic refinements suggested by genomic analysis of butterflies
J Zhang, Q Cong, J Shen, L Song, PA Opler, NV Grishin
The taxonomic report of the International Lepidoptera Survey 11, 2023
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9934913/
Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas
J Zhang, Q Cong, NV Grishin
Insecta mundi 2023, 2023
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9880598/
2022
Genomic analysis reveals a new genus of Firetip skippers (Lepidoptera: Hesperiidae: Pyrrhopyginae)
J Zhang, J Shen, Q Cong, G Martin, NV Grishin
Tropical lepidoptera research 32 (2), 73, 2022
Available at: https://journals.flvc.org/troplep/article/download/132432/136163
Erythrina stem borer moth in California–New taxonomic status and implications for control of this emerging pest
A Sourakov, J Zhang, Q Cong, L Song, NV Grishin
Journal of Applied Entomology 146 (10), 1225-1229, 2022
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918057/
Computed cancer interactome explains the effects of somatic mutations in cancers
J Zhang, J Pei, J Durham, T Bos, Q Cong
Protein Science 31 (12), e4479, 2022
Available at: https://onlinelibrary.wiley.com/doi/full/10.1002/pro.4479
Neotype designation for Papilio fulgerator Walch, 1775 (Hesperiidae: Eudaminae)
J Zhang, Q Cong, G Lamas, NV Grishin
The taxonomic report of the International Lepidoptera Survey 10 (8), 1, 2022
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645580/
A tissue injury repair pathway distinct but parallel to host pathogen defense
S Liu, YH Hur, X Cai, Q Cong, Y Yang, C Xu, AM Bilate, KA Uy Gonzales, CJ Cowley, B Hurwitz, JD Luo…
bioRxiv, 2022.10. 18.509515, 2022
Available at: https://www.biorxiv.org/content/10.1101/2022.10.18.509515.full
Genomics reveals a new genus and species from a single female specimen (Lepidoptera: Hesperiidae: Hesperiinae: Hesperiini: Moncina)
E Brockmann, J Zhang, Q Cong, NV Grishin
Insecta mundi 2022, 2022
Available at: https://journals.flvc.org/mundi/article/download/132566/136343
The Taxonomic Report
J Zhang, Q Cong, J Shen, L Song, NV Grishin
Available at: https://www.academia.edu/download/95860814/T_20REPORT_20107_20Taxonomic_20discoveries_20enabled_20by_20genomic_20analysis.pdf
Taxonomic discoveries enabled by genomic analysis of butterflies
J Zhang, Q Cong, J Shen, L Song, RJ Gott, P Boyer, CS Guppy, S Kohler, G Lamas, PA Opler, NV Grishin
The taxonomic report of the International Lepidoptera Survey 10 (7), 1, 2022
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645532/
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling
J Pei, J Zhang, Q Cong
Bioinformatics 38 (18), 4301-4311, 2022
Available at: https://academic.oup.com/bioinformatics/article/38/18/4301/6650275
Cryo-EM structure of a type IV secretion system
…, A Redzej, N Lukoyanova, C Oomen, N Braun, M Ukleja, F Lu, TRD Costa, EV Orlova, D Baker, Q Cong…
Nature 607 (7917), 191-196, 2022
Available at: https://www.nature.com/articles/s41586-022-04859-y.pdf
Checking the checkered taxonomy of Plötz’s checkered skippers (Hesperiidae: Pyrgini)
J Zhang, Q Cong, JM Burns, NV Grishin
The taxonomic report of the International Lepidoptera Survey 10, 2022
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9076161/
Genomic DNA sequencing reveals two new North American species of Staphylus (Hesperiidae: Pyrginae: Carcharodini)
J Zhang, Q Cong, J Shen, L Song, NV Grishin
The taxonomic report of the International Lepidoptera Survey 10, 2022
Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9080022/
Evolutionary origin and sequence signatures of the heterodimeric ABCG5/ABCG8 transporter. Pei J., Cong Q. Protein Science. 31 (5): e4297.
Taxonomic changes suggested by the genomic analysis of Hesperiidae (Lepidoptera). Zhang J., Cong Q., Shen J., Grishin N.V. Insecta mundi. 2022 (921): 1409.
Co-Component Signal Transduction Systems: fast-evolving virulence regulation cassettes discovered in enteric bacteria. Kinch L.N., Cong Q., Jaishankar J., Orth K. bioRxiv
Towards a structurally resolved cancer interactome. Zhang J., Pei J., Durham J., Bos T., Cong Q. bioRxiv.
Genomics‐based higher classification of the species‐rich hairstreaks (Lepidoptera: Lycaenidae: Eumaeini). Robbins R.K., Cong Q., Zhang J., Shen J., Busby R.C., Faynel C., Duarte M., Martins A.R., Prieto C., Lamas G., Grishin N.V. Systematic Entomology. (online publication)
2021
Influence of the large‐Z effect during contact between butterfly sister species. Nelson E.D., Cong Q., Grishin N.V. Ecology and evolution. 11 (17): 11615-11626.
Accurate prediction of protein structures and interactions using a three-track neural network. Baek M., DiMaio F., Anishchenko I., Dauparas J., Ovchinnikov S., Lee G.R., Wang J., Cong Q., Kinch L.N., Schaeffer R.D., Millán C., Park H., Adams C., Glassman C.R., DeGiovanni A., Pereira J.H., Rodrigues A.V., Dijk A.A.V., Ebrecht A.C., Opperman D.J., Sagmeister T., Buhlheller C., Pavkov-Keller T., Rathinaswamy M.K., Dalwadi U., Yip C.K., Burke J.E., Garcia K.C., Grishin N.V., Adams P.D., Read R.J., Baker D. Science. 373 (6557): 871-876.
Comment (Case 3709)–Additional comments on the proposed conservation of names for western North American Hesperia comma-group subspecies through designation of neotypes. Calhoun J.V., Cong Q., Grishin N.V., Warren A.D. The Bulletin of Zoological Nomenclature. 78 (2): 131-132.
A uniquely patterned new species of Emesis from Honduras (Riodinidae). Gallardo R.J., Zhang J., Cong Q., Shen J., Grishin N.V. Tropical Lepidoptera Research. 31 (1): 53-59.
A covariation analysis reveals elements of selectivity in quorum sensing systems. Miranda S.W., Cong Q., Schaefer A.L., MacLeod E.K., Zimenko A., Baker D., Greenberg E.P. eLife. 10: e69169.
Genomics reveals the origins of historical specimens. Cong Q., Shen J., Zhang J., Li W., Kinch L.N., Calhoun J.V., Warren A.D., Grishin N.V. Molecular biology and evolution. 38 (5): 2166-2176.
A switch to feeding on cycads generates parallel accelerated evolution of toxin tolerance in two clades of Eumaeus caterpillars (Lepidoptera: Lycaenidae). Robbins R.K., Cong Q., Zhang J., Shen J., Riera J.Q., Murray D., Busby R.C., Faynel C., Hallwachs W., Janzen D.H., Grishin N.V. Proceedings of the National Academy of Sciences. 118 (7): e2018965118.
Computed structures of core eukaryotic protein complexes. Humphreys I.R., Pei J., Baek M., Krishnakumar A., Anishchenko I., Ovchinnikov S., Zhang J., Ness T.J., Banjade S., Bagde S.R., Stancheva V.G., Li X., Liu K., Zheng Z., Barrero D.J., Roy U., Kuper J., Fernández I.S., Szakal B., Branzei D., Rizo J., Kisker C., Greene E.C., Biggins S., Keeney S., Miller E.A., Fromme J.C., Hendrickson T.L., Cong Q., Baker D. Science. 374 (6573): eabm4805.
Two new species of Hermeuptychia from North America and three neotype designations (Nymphalidae: Satyrinae). Cong Q., Barbosa E.P., Marín M.A., Freitas A.V., Lamas G., Grishin N.V. The Taxonomic Report of the International Lepidoptera Survey. 9 (7).
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling. Pei J., Zhang J., Cong Q. bioRxiv.
Genomics-guided refinement of butterfly taxonomy. Zhang J., Cong Q., Shen J., Opler P.A., Grishin N.V. The taxonomic report of the International Lepidoptera Survey. 9 (3).
2020
A genomic perspective on the taxonomy of the subtribe Carcharodina (Lepidoptera: Hesperiidae: Carcharodini). Zhang J., Brockmann E., Cong Q., Shen J., Grishin N.V. Zootaxa. 4748 (1).
Genomic evidence suggests further changes of butterfly names. Zhang J., Cong Q., Shen J., Opler P.A., Grishin N.V. The Taxonomic Report of the International Lepidoptera Survey 8 (7).
Speciation in North American Junonia from a genomic perspective. Cong Q., Zhang J., Shen J., Cao X., Brévignon C., Grishin N.V. Systematic entomology. 45 (4): 803-837.
Protein contact prediction using metagenome sequence data and residual neural networks. Wu Q., Peng Z., Anishchenko I., Cong Q., Baker D., Yang J. Bioinformatics. 36 (1): 41-48.
The meadow jumping mouse genome and transcriptome suggest mechanisms of hibernation. Cong Q., Brem E.A., Zhang J., Alföldi J., Johnson J., Karlsson E.K., Lindblad-Toh K., Malaney J.L., Israelsen W.J. bioRxiv.
The mitogenome of a Malagasy butterfly Malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of Hesperiidae (Lepidoptera) Zhang J., Lees D.C., Shen J., Cong Q., Huertas B., Martin G., Grishin N.V. Genome. 63 (4): 195-202.
2019
Genomic analysis of the tribe Emesidini (Lepidoptera: Riodinidae). Zhang J., Shen J., Cong Q., Grishin N.V. Zootaxa. 4668 (4): 475-488.
Assessing predictions on fitness effects of missense variants in calmodulin. Zhang J., Kinch L.N., Cong Q., Katsonis P., Lichtarge O., Savojardo C., Babbi G., Martelli P.L., Capriotti E., Casadio R., Garg A., Pal D., Weile J., Sun S., Verby M., Roth F.P., Grishin N.V. Human mutation. 40 (9): 1463-1473.
Protein interaction networks revealed by proteome coevolution. Cong Q., Anishchenko I., Ovchinnikov S., Baker D. Science. 365 (6449): 185-189.
Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae). Zhang J., Cong Q., Shen J., Brockmann E., Grishin N.V. Proceedings of the Royal Society B. 286 (1903): 20190609.
Functional expression and characterization of the envelope glycoprotein E1E2 heterodimer of hepatitis C virus. Cao L., Yu B., Kong D., Cong Q., Yu T., Chen Z., Hu Z., Chang H., Zhong J., Baker D., He Y. PLoS pathogens. 15 (5): e1007759.
Comment (Case 3709)–More comments on the proposed conservation of names for western North American Hesperia comma-group subspecies through designation of neotypes. Calhoun J.V., Cong Q., Grishin N.V., Warren A.D. The Bulletin of Zoological Nomenclature. 76 (1): 57-59.
Genomes of skipper butterflies reveal extensive convergence of wing patterns. Li W., Cong Q., Shen J., Zhang J., Hallwachs W., Janzen D.H., Grishin N.V. Proceedings of the National Academy of Sciences. 116 (13): 6232-6237.
The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots. Cong Q., Li W., Borek D., Otwinowski Z., Grishin N.V. Molecular Genetics and Genomics. 294 (1): 211-226.
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking. Porter K.A., Padhorny D., Desta I., Ignatov M., Beglov D., Kotelnikov S., Sun Z., Alekseenko A., Anishchenko I., Cong Q., Ovchinnikov S., Baker D., Vajda S., Kozakov D. Proteins: Structure, Function, and Bioinformatics. 87 (12): 1241-1248.
High‐accuracy refinement using Rosetta in CASP13. Park H., Lee G.R., Kim D.E., Anishchenko I., Cong Q., Baker D. Proteins: Structure, Function, and Bioinformatics. 87 (12): 1276-1282
Fifty new genera of Hesperiidae (Lepidoptera). Cong Q., Zhang J., Shen J., Grishin N. Insecta mundi. 2019: 0731.
Gypsy moth genome provides insights into flight capability and virus–host interactions. Zhang J., Cong Q., Rex E.A., Hallwachs W., Janzen D.H., Grishin N.V., Gammon D.B. Proceedings of the National Academy of Sciences. 116 (5): 1669-1678.
Genomic determinants of speciation. Cong Q., Zhang J., Grishin N.V. bioRxiv. 837666.
Genomics of a complete butterfly continent. Zhang J., Cong Q., Shen J., Opler P.A., Grishin N.V. BioRxiv. 829887.
Changes to North American butterfly names. Zhang J., Cong Q., Shen J., Opler P.A., Grishin N.V. The taxonomic report of the International Lepidoptera Survey 8: (2).
Three new subfamilies of skipper butterflies (Lepidoptera, Hesperiidae). Zhang J., Cong Q., Shen J., Brockmann E., Grishin N.V. Zookeys. 861: 91-105.
2018
Expanding clinical phenotype in CACNA1C related disorders: From neonatal onset severe epileptic encephalopathy to late‐onset epilepsy. Bozarth X., Dines J.N., Cong Q., Mirzaa G.M., Foss K., Merritt J.L., Thies J., Mefford H.C., Novotny E. American Journal of Medical Genetics Part A. 176 (12): 2733-2739.
Comparative analysis of Swallowtail transcriptomes suggests molecular determinants for speciation and adaptation. Cong Q., Grishin N.V. Genome. 61 (12): 843-855.
2017
Assessing predictions of fitness effects of missense mutations in SUMO‐conjugating enzyme UBE2I. Zhang J., Kinch L.N., Cong Q., Weile J., Sun S., Cote A.G., Roth F.P., Grishin N.V. Human mutation. 38 (9): 1051-1063.
Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology. Janzen D.H., Burns J.M., Cong Q., Hallwachs W., Dapkey T., Manjunath R., Hajibabaei M., Hebert P.D., Grishin N.V. Proceedings of the National Academy of Sciences. 114 (31): 8313-8318.
Complete genome of Achalarus lyciades, the first representative of the Eudaminae subfamily of skippers. Shen J., Cong Q., Borek D., Otwinowski Z., Grishin N.V. Current Genomics. 18 (4): 366-374.
Acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus strains maintain an antibacterial type VI secretion system with versatile effector repertoires. Li P., Kinch L.N., Ray A., Dalia A.B., Cong Q., Nunan L.M., Camilli A., Grishin N.V., Salomon D., Orth K. Applied and environmental microbiology. 83 (13): e00737-17.
When COI barcodes deceive: complete genomes reveal introgression in hairstreaks. Cong Q., Shen J., Borek D., Robbins R.K., Opler P.A., Otwinowski Z., Grishin N.V. Proceedings of the Royal Society B: Biological Sciences. 284 (1848): 20161735.
Mitogenomes of the four Agathymus holotypes collected 55 years ago. Zhang J., Cong Q., Shen J., Grishin N.V. Mitochondrial DNA Part B. 2 (2): 598-600.
The first complete genomes of Metalmarks and the classification of butterfly families. Cong Q., Shen J., Li W., Borek D., Otwinowski Z., Grishin N.V. Genomics. 109 (5-6): 485-493.
The complete mitogenome of Euschemon rafflesia (Lepidoptera: Hesperiidae). Zhang J., Cong Q., Shen J., Fan X., Wang M., Grishin N.V. Mitochondrial DNA Part B. 2 (1): 136-138.
The complete mitochondrial genome of a skipper Burara striata (Lepidoptera: Hesperiidae). Zhang J., Cong Q., Shen J., Wang R., Grishin N.V. Mitochondrial DNA Part B 2 (1): 145-147.
Mitogenomes of giant-skipper butterflies reveal an ancient split between deep and shallow root feeders. Zhang J., Cong Q., Fan X., Wang R., Wang M., Grishin N.V. F1000Research. 6: 222.
2016
Complete genomes of Hairstreak butterflies, their speciation and nucleo-mitochondrial incongruence. Cong Q., Shen J., Borek D., Robbins R.K., Otwinowski Z., Grishin N.V. Scientific reports. 6 (1): 1-15.
Speciation in cloudless sulphurs gleaned from complete genomes. Cong Q., Shen J., Warren A.D., Borek D., Otwinowski Z., Grishin N.V. Genome biology and evolution. 8 (3): 915-931.
The complete mitochondrial genome of Lerema accius and its phylogenetic implications. Cong Q., Grishin N.V. PeerJ. 4: e1546.
The complete mitogenome of Achalarus lyciades (Lepidoptera: Hesperiidae). Shen J., Cong Q., Grishin N.V. Mitochondrial DNA Part B. 1 (1): 581-583.
Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins. Shen J., Cong Q., Kinch L.N., Borek D., Otwinowski Z., Grishin N.V. F1000Research. 5: 2631.
2015
Predictive and comparative analysis of Ebolavirus proteins. Cong Q., Pei J., Grishin N.V. Cell Cycle. 14 (17): 2785-2797.
The complete mitochondrial genome of Papilio glaucus and its phylogenetic implications. Shen J., Cong Q., Grishin N.V. Meta Gene. 5: 68-83.
Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation. Liu S., Cai X., Wu J., Cong Q., Chen X., Li T., Du F., Ren J., Wu Y., Grishin N.V., Chen Z.J. Science. 347 (6227): aaa2630.
Tiger swallowtail genome reveals mechanisms for speciation and caterpillar chemical defense. Cong Q., Borek D., Otwinowski Z., Grishin N.V. Cell reports. 10 (6): 910-919.
Skipper genome sheds light on unique phenotypic traits and phylogeny. Cong Q., Borek D., Otwinowski Z., Grishin N.V. BMC genomics. 16 (1): 1-13.
2014
A new Heraclides swallowtail (Lepidoptera, Papilionidae) from North America is recognized by the pattern on its neck. Shiraiwa K., Cong Q., Grishin N.V. Zookeys. 468: 85.
A new Hermeuptychia (Lepidoptera, Nymphalidae, Satyrinae) is sympatric and synchronic with H. sosybius in southeast US coastal plains, while another new Hermeuptychia species inhabits south Texas and northeast Mexico. Cong Q., Grishin N.V. ZooKeys. 379: 43.
2013
Seq2Ref: a web server to facilitate functional interpretation. Li W., Cong Q., Kinch L.N., Grishin N.V. BMC bioinformatics. 14 (1): 1-7.
M2SG: mapping human disease-related genetic variants to protein sequences and genomic loci. Ji R., Cong Q., Li W., Grishin N.V. Bioinformatics. 29 (22): 2953-2954.
2012
Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome. Cong Q., Kinch L.N., Kim B., Grishin N.V. PloS one. 7 (7): e41071.
MESSA: MEta-server for protein sequence analysis. Cong Q., Grishin N.V. BMC biology. 10 (1): 1-12.
The ABC transporters in Candidatus Liberibacter asiaticus. Li W., Cong Q., Pei J., Kinch L.N., Grishin N.V. Proteins: Structure, Function, and Bioinformatics. 80 (11): 2614-2628.
2011
An automatic method for CASP9 free modeling structure prediction assessment. Cong Q., Kinch L.N., Pei J., Shi S., Grishin V.N., Li W., Grishin N.V. Bioinformatics. 27 (24): 3371-3378.
CASP9 target classification. Kinch L.N., Shi S., Cheng H., Cong Q., Pei J., Mariani V., Schwede T., Grishin N.V. PROTEINS: structure, function, and bioinformatics. 79 (S10): 21-36.
CASP9 assessment of free modeling target predictions. Kinch L., Shi S.Y., Cong Q., Cheng H., Liao Y., Grishin N.V. Proteins: Structure, Function, and Bioinformatics. 79 (S10): 59-73.
2010
HangOut: generating clean PSI-BLAST profiles for domains with long insertions. Kim B., Cong Q., Grishin N.V. Bioinformatics. 26 (12): 1564-1565.
Structural differences between proteins with similar sequences. Cong Q., Kim B., Kinch L.N., Grishin N.V. 2010 IEEE International Conference on BioInformatics and BioEngineering. 2010: 250-256.